|
| Sample name: |
SC31_50_Metagenome
|
| Collection timestamp: |
2018-08-29T03:30:29-04:00
|
| Location [GAZ ontology]: |
Lake Erie
|
| NOAA site: | |
| Reads: | |
| Sample type: |
metagenome
|
| Has paired data: |
False
|
| SRA accession: | SRR13224068 |
| Amplicon target: | |
| Forward primer: | |
| Reverse primer: | |
| Read count: |
73426098
|
| Reads mapped contigs: |
36374096
|
| Reads mapped genes: |
22881735
|
| NCBI BioProject: | PRJNA679730 |
| NCBI BioSample: | SAMN16845044 |
| GOLD analysis projectID: | |
| GOLD sequencing projectID: | |
| JGI study: | |
| JGI biosample: | |
| GAZ id: |
GAZ:00003932
|
| Latitude [decimal degrees]: |
41.8460
|
| Longitude [decimal degrees]: |
-83.17243
|
| ENVO Ontology ID [ENVO ontology]: |
large freshwater lake biome [ENVO:00000891]
|
| Env local scale: | |
| Sample material [ENVO ontology]: |
water [ENVO:00002006]
|
| Keywords: |
HABs
|
| Sample collection depth: |
2.4 m
|
| Sediment depth: | |
| Depth at sampling location: | |
| Filter retained pore size: |
5 μm
|
| Pre-filter pore size: | |
| pH: | |
| Temperature: |
24.72 °C
|
| Calcium: | |
| Potassium: | |
| Phosphate: | |
| Magnesium: | |
| Ammonium: | |
| Dissolved oxygen: |
8.59 mg/L
|
| Conductivity: | |
| Secchi depth: | |
| Turbidity: | |
| Particulate microcystin: | |
| Dissolved Microcystin: | |
| Phycocyanin: | |
| Microcystin: | |
| Anatoxin: | |
| Chlorophyll: |
3.48 μg/L
|
| Total phosphorus: | |
| Total dissolved phosphorus: | |
| Soluble reactive phosphorus: | |
| Ammonia: | |
| Nitrate and nitrite: | |
| Nitrate: | |
| Nitrite: | |
| Urea: | |
| Particulate organic carbon: | |
| Particulate organic nitrogen: | |
| Dissolved organic carbon: | |
| DOM absorbance at 400 nm: | |
| Hydrogen peroxide: | |
| Suspended particulate matter: | |
| Suspended volitile solids: | |
| Microcystis cell count: | |
| Planktothrix cell count: | |
| Anabaena cell count: | |
| Cylidrospermopsis cell count: | |
| Ice cover: | |
| Chlorophyll a fluorescence: | |
| Sample collection device: |
LRAUV-3G ESP
|
| Modified or experimental: |
False
|
| Is isolate: |
False
|
| Negative control [TRUE / FALSE]: |
False
|
| Mock community [TRUE / FALSE]: |
False
|
| Volume filtered: |
168.3 mL
|
| Filtration duration [hh:mm:ss]: |
0:10:04
|
| qPCR; Phytoxigene total cyanobacteria: |
68936 copies/mL
|
| qPCR; Phytoxigene mcyE: |
22 copies/mL
|
| qPCR; Phytoxigene sxtA: | |
| Silicate: | |
| Total nitrogen: | |
| Green algae: | |
| Bluegreen algae: | |
| Diatoms: | |
| Cryptophyta: | |
| Total microcystin: | |
| Attenuation: | |
| Transmission: | |
| Photosynthetically active radiation: |
0 μE/m2/s
|
| Sky: | |
| Wave height: | |
| Wind speed: | |
| Phycocyanin fluoresence: | |
| Salinity measured using a sonde [parts per thousand]: | |
| Atmospheric temperature: | |
| Particulate cylindrospermopsin: | |
| Redox potential-ORP [millivolts]: | |
| Replicate ID: | |
| AlgaeTorch Cyanobacterial abundance: | |
| AlgaeTorch total: | |
| Environment Canada Sampling site: | |
| Environment Kenya Sampling site: | |
| Amended site name: | |
| Station description about location: | |