Sample name: |
SC22_50_A_Metagenome
|
Collection timestamp: |
2018-08-30T05:42:01-04:00
|
Location [GAZ ontology]: |
Lake Erie
|
NOAA site: | |
Reads: | |
Sample type: |
metagenome
|
Has paired data: |
False
|
SRA accession: | SRR13224082 |
Amplicon target: | |
Forward primer: | |
Reverse primer: | |
Read count: |
69823046
|
Reads mapped contigs: |
40028051
|
Reads mapped genes: |
32492809
|
NCBI BioProject: | PRJNA679730 |
NCBI BioSample: | SAMN16845032 |
GOLD analysis projectID: | |
GOLD sequencing projectID: | |
JGI study: | |
JGI biosample: | |
GAZ id: |
GAZ:00003932
|
Latitude [decimal degrees]: |
41.8326
|
Longitude [decimal degrees]: |
-83.33537
|
ENVO Ontology ID [ENVO ontology]: |
large freshwater lake biome [ENVO:00000891]
|
Env local scale: | |
Sample material [ENVO ontology]: |
water [ENVO:00002006]
|
Keywords: |
HABs
|
Sample collection depth: |
2.48 m
|
Sediment depth: | |
Depth at sampling location: | |
Filter retained pore size: |
5 μm
|
Pre-filter pore size: | |
pH: | |
Temperature: |
24.75 °C
|
Calcium: | |
Potassium: | |
Phosphate: | |
Magnesium: | |
Ammonium: | |
Dissolved oxygen: |
8.12 mg/L
|
Conductivity: | |
Secchi depth: | |
Turbidity: | |
Particulate microcystin: | |
Dissolved Microcystin: | |
Phycocyanin: | |
Microcystin: | |
Anatoxin: | |
Chlorophyll: |
4.85 μg/L
|
Total phosphorus: | |
Total dissolved phosphorus: | |
Soluble reactive phosphorus: | |
Ammonia: | |
Nitrate and nitrite: | |
Nitrate: | |
Nitrite: | |
Urea: | |
Particulate organic carbon: | |
Particulate organic nitrogen: | |
Dissolved organic carbon: | |
DOM absorbance at 400 nm: | |
Hydrogen peroxide: | |
Suspended particulate matter: | |
Suspended volitile solids: | |
Microcystis cell count: | |
Planktothrix cell count: | |
Anabaena cell count: | |
Cylidrospermopsis cell count: | |
Ice cover: | |
Chlorophyll a fluorescence: | |
Sample collection device: |
LRAUV-3G ESP
|
Modified or experimental: |
False
|
Is isolate: |
False
|
Negative control [TRUE / FALSE]: |
False
|
Mock community [TRUE / FALSE]: |
False
|
Volume filtered: |
79.5 mL
|
Filtration duration [hh:mm:ss]: |
0:04:44
|
qPCR; Phytoxigene total cyanobacteria: |
323884 copies/mL
|
qPCR; Phytoxigene mcyE: |
1268 copies/mL
|
qPCR; Phytoxigene sxtA: | |
Silicate: | |
Total nitrogen: | |
Green algae: | |
Bluegreen algae: | |
Diatoms: | |
Cryptophyta: | |
Total microcystin: | |
Attenuation: | |
Transmission: | |
Photosynthetically active radiation: |
0 μE/m2/s
|
Sky: | |
Wave height: | |
Wind speed: | |
Phycocyanin fluoresence: | |
Salinity measured using a sonde [parts per thousand]: | |
Atmospheric temperature: | |
Particulate cylindrospermopsin: | |
Redox potential-ORP [millivolts]: | |
Replicate ID: | |
AlgaeTorch Cyanobacterial abundance: | |
AlgaeTorch total: | |
Environment Canada Sampling site: | |
Environment Kenya Sampling site: | |
Amended site name: | |
Station description about location: | |