Sample: SC12_50_18S-ITS

[krona chart | abundance/taxa] [file downloads]
Details
Dataset:Automated sampling of Western Lake Erie[…] - Den Uyl et al. 2022
Sample name: SC12_50_18S-ITS
Collection timestamp: 2018-09-01T03:09:59-04:00
Location [GAZ ontology]: Lake Erie
NOAA site:
Reads:
Sample type: amplicon
Has paired data: False
SRA accession:SRR13173680
Amplicon target: 18S ITS
Forward primer: 18S ITS Fwd
Reverse primer: 18S ITS Rev
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA679730
NCBI BioSample:SAMN16844927
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study:
JGI biosample:
GAZ id: GAZ:00003932
Latitude [decimal degrees]: 41.7871
Longitude [decimal degrees]: -83.16259
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale:
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords: HABs
Sample collection depth: 2.51 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 5 μm
Pre-filter pore size:
pH:
Temperature: 24.54 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Dissolved oxygen: 8.38 mg/L
Conductivity:
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll: 4.63 μg/L
Total phosphorus:
Total dissolved phosphorus:
Soluble reactive phosphorus:
Ammonia:
Nitrate and nitrite:
Nitrate:
Nitrite:
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sample collection device: LRAUV-3G ESP
Modified or experimental: False
Is isolate: False
Negative control [TRUE / FALSE]: False
Mock community [TRUE / FALSE]: False
Volume filtered: 162.2 mL
Filtration duration [hh:mm:ss]: 0:10:03
qPCR; Phytoxigene total cyanobacteria: 75293 copies/mL
qPCR; Phytoxigene mcyE: 51 copies/mL
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin:
Attenuation:
Transmission:
Photosynthetically active radiation: 0 μE/m2/s
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence:
Salinity measured using a sonde [parts per thousand]:
Atmospheric temperature:
Particulate cylindrospermopsin:
Redox potential-ORP [millivolts]:
Replicate ID:
AlgaeTorch Cyanobacterial abundance:
AlgaeTorch total:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended site name:
Station description about location: