Sample: 1163-1

Details
Dataset:Lake Erie cyanobacterial bloom net tow[…] - Steffen et al. 2015
Sample name: 1163-1
Collection timestamp: 2012-08-14
Location [GAZ ontology]: Lake Erie
NOAA site:
Reads:
Sample type: metatranscriptome
Has paired data: False
SRA accession:SRR1927225
Amplicon target:
Fwd primer:
Rev primer:
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA277855
Biosample:SAMN03397496
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study ID:
JGI biosample ID:
GAZ id: GAZ:00003931
Latitude [decimal degrees]: 41.46
Longitude [decimal degrees]: -82.71
ENVO Ontology ID [ENVO ontology]: Eutrophic Lake [ENVO:01000548]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords: HABs
Sample collection depth:
Sediment depth:
Depth at sampling location:
Filter retained pore size: 0.22 μm
Pre-filter pore size:
pH: 8.06
Temperature: 22.8 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Nitrate:
Dissolved oxygen:
Conductivity:
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
Microcystin: 0.61 μg/L
Anatoxin: 0.77 μg/L
Chlorophyll: 15.6 μg/L
Total phosphorus:
Total dissolved phosphorus:
Soluble reactive phosphorus:
Ammonia:
Nitrate and nitrite:
Nitrite:
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count: 4027 cells/mL
Planktothrix cell count: 267626 cells/mL
Anabaena cell count: 8359 cells/mL
Cylidrospermopsis cell count: 15121 cells/mL
Ice cover:
Chlorophyll a fluorescence:
Sampling device:
Modified or experimental: False
Is isolate:
Negative control [TRUE / FALSE]:
Mock community [TRUE / FALSE]:
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin determined by LCMSMS:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence :
Salinity measured using a sonde:
Atmospheric temperature:
Particulate cylindrospermopsin, measured via ELISA:
Redox potential-ORP:
Replicate id if metagenomic samples sequenced in replicate:
AlgaeTorch Cyanobacterial abundance detection (cyanobacteria chlorophyll-a):
AlgaeTorch total chlorophyll-a detection:
Environment Canada Sampling site: 1163
Environment Kenya Sampling site:
Amended sampling location name if not the same as the original site name:
Station description about location: