Sample: SC04_50_Metagenome

[ krona chart | abundance/taxa | abundance/functions ]
Details
Dataset:Automated sampling of Western Lake Erie[…] - Den Uyl et al. 2022
Sample name: SC04_50_Metagenome
Collection timestamp: 2018-09-02T23:08:06-04:00
Location [GAZ ontology]: Lake Erie
NOAA site:
Reads:
Sample type: metagenome
Has paired data: False
SRA accession:SRR13224070
Amplicon target:
Fwd primer:
Rev primer:
Read count: 30530400
Reads mapped contigs: 13572763
Reads mapped genes: 9732014
NCBI BioProject:PRJNA679730
Biosample:SAMN16844998
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study ID:
JGI biosample ID:
GAZ id: GAZ:00003932
Latitude [decimal degrees]: 41.6674
Longitude [decimal degrees]: -83.10710
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale:
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords: HABs
Sample collection depth: 2.58 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 5 μm
Pre-filter pore size:
pH:
Temperature: 25.31 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Nitrate:
Dissolved oxygen: 9.23 mg/L
Conductivity:
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll: 3.38 μg/L
Total phosphorus:
Total dissolved phosphorus:
Soluble reactive phosphorus:
Ammonia:
Nitrate and nitrite:
Nitrite:
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sampling device: LRAUV-3G ESP
Modified or experimental: False
Is isolate: False
Negative control [TRUE / FALSE]: False
Mock community [TRUE / FALSE]: False
Volume filtered: 84.200 mL
Filtration duration [hh:mm:ss]: 0:04:42
qPCR; Phytoxigene total cyanobacteria: 25708 copies/mL
qPCR; Phytoxigene mcyE: 542 copies/mL
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin determined by LCMSMS:
Attenuation:
Transmission:
Photosynthetically active radiation: 0.00 μE/m2/s
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence :
Salinity measured using a sonde:
Atmospheric temperature:
Particulate cylindrospermopsin, measured via ELISA:
Redox potential-ORP:
Replicate id if metagenomic samples sequenced in replicate:
AlgaeTorch Cyanobacterial abundance detection (cyanobacteria chlorophyll-a):
AlgaeTorch total chlorophyll-a detection:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended sampling location name if not the same as the original site name:
Station description about location: