Sample: rr806p4

[krona chart | abundance/taxa] [file downloads]
Details
Dataset:Lake Mendota (WI) amplicon metagenomes - Rohwer et al. 2023
Sample name: rr806p4
Collection timestamp: 2014-08-07
Location [GAZ ontology]: Lake Mendota
NOAA site:
Reads:
Sample type: amplicon
Has paired data:
SRA accession:SRS13458230
Amplicon target:
Forward primer:
Reverse primer:
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA846788
NCBI BioSample:SAMN29154375
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study:
JGI biosample:
GAZ id: GAZ:00007908
Latitude [decimal degrees]: 43.0995
Longitude [decimal degrees]: -89.4045
ENVO Ontology ID [ENVO ontology]: Freshwater Lake [ENVO:00000021]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords:
Sample collection depth:
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Depth at sampling location:
Filter retained pore size:
Pre-filter pore size:
pH:
Temperature:
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Dissolved oxygen:
Conductivity:
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll:
Total phosphorus:
Total dissolved phosphorus:
Soluble reactive phosphorus:
Ammonia:
Nitrate and nitrite:
Nitrate:
Nitrite:
Urea:
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Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
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Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sample collection device:
Modified or experimental: False
Is isolate:
Negative control [TRUE / FALSE]:
Mock community [TRUE / FALSE]:
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin:
Attenuation:
Transmission:
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Sky:
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Phycocyanin fluoresence:
Salinity measured using a sonde [parts per thousand]:
Atmospheric temperature:
Particulate cylindrospermopsin:
Redox potential-ORP [millivolts]:
Replicate ID:
AlgaeTorch Cyanobacterial abundance:
AlgaeTorch total:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended site name:
Station description about location: