Sample: MI27M_DCL_Aug2012

[krona chart | abundance/taxa] [file downloads]
Details
Dataset:Transects across the Laurentian Great[…] - Paver et al. 2019
Sample name: MI27M_DCL_Aug2012
Collection timestamp: 2012-08-02
Location [GAZ ontology]: Lake Michigan
NOAA site:
Reads:
Sample type: amplicon
Has paired data: True
SRA accession:SRR10688554
Amplicon target: 16S V4
Forward primer: 515F-C
Reverse primer: 806R
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA591360
NCBI BioSample:SAMN13382793
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study:
JGI biosample:
GAZ id: GAZ:00003863
Latitude [decimal degrees]: 43.6000
Longitude [decimal degrees]: -86.91667
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords:
Sample collection depth: 36.8 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 0.22 μm
Pre-filter pore size: 1.6 μm
pH:
Temperature:
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
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Secchi depth:
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Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
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Anatoxin:
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Nitrate and nitrite:
Nitrate:
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Urea:
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DOM absorbance at 400 nm:
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Planktothrix cell count:
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Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sample collection device:
Modified or experimental: False
Is isolate:
Negative control [TRUE / FALSE]:
Mock community [TRUE / FALSE]:
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
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Cryptophyta:
Total microcystin:
Attenuation:
Transmission:
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Sky:
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Phycocyanin fluoresence:
Salinity measured using a sonde [parts per thousand]:
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Particulate cylindrospermopsin:
Redox potential-ORP [millivolts]:
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Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended site name:
Station description about location: