Dataset: | Sandusky Bay water samples - McKindles et al. 2023 |
Sample name: |
Bridge_09232019
|
Collection timestamp: |
2019-09-23
|
Location [GAZ ontology]: |
Sandusky Bay
|
NOAA site: | |
Reads: | |
Sample type: |
metatranscriptome
|
Has paired data: | |
SRA accession: | SRS17056696 |
Amplicon target: | |
Forward primer: | |
Reverse primer: | |
Read count: | |
Reads mapped contigs: | |
Reads mapped genes: | |
NCBI BioProject: | PRJNA945377 |
NCBI BioSample: | SAMN33780069 |
GOLD analysis projectID: | |
GOLD sequencing projectID: | |
JGI study: | |
JGI biosample: | |
GAZ id: |
GAZ:00084606
|
Latitude [decimal degrees]: |
41.4802
|
Longitude [decimal degrees]: |
-82.83433
|
ENVO Ontology ID [ENVO ontology]: |
large freshwater lake biome [ENVO:00000891]
|
Env local scale: |
bay[ENVO:00000032]
|
Sample material [ENVO ontology]: |
water [ENVO:00002006]
|
Keywords: | |
Sample collection depth: |
1 m
|
Sediment depth: | |
Depth at sampling location: | |
Filter retained pore size: | |
Pre-filter pore size: | |
pH: |
9.45
|
Temperature: | |
Calcium: | |
Potassium: | |
Phosphate: | |
Magnesium: | |
Ammonium: |
0.01 mg/L
|
Dissolved oxygen: |
10.98 mg/L
|
Conductivity: |
404 μS/cm
|
Secchi depth: |
0.5 m
|
Turbidity: | |
Particulate microcystin: | |
Dissolved Microcystin: | |
Phycocyanin: | |
Microcystin: | |
Anatoxin: | |
Chlorophyll: | |
Total phosphorus: | |
Total dissolved phosphorus: | |
Soluble reactive phosphorus: |
716 μg/L
|
Ammonia: | |
Nitrate and nitrite: | |
Nitrate: |
0.011 mg/L
|
Nitrite: |
30 μg/L
|
Urea: | |
Particulate organic carbon: | |
Particulate organic nitrogen: | |
Dissolved organic carbon: | |
DOM absorbance at 400 nm: | |
Hydrogen peroxide: | |
Suspended particulate matter: | |
Suspended volitile solids: | |
Microcystis cell count: | |
Planktothrix cell count: | |
Anabaena cell count: | |
Cylidrospermopsis cell count: | |
Ice cover: | |
Chlorophyll a fluorescence: | |
Sample collection device: | |
Modified or experimental: |
False
|
Is isolate: | |
Negative control [TRUE / FALSE]: | |
Mock community [TRUE / FALSE]: | |
Volume filtered: | |
Filtration duration [hh:mm:ss]: | |
qPCR; Phytoxigene total cyanobacteria: | |
qPCR; Phytoxigene mcyE: | |
qPCR; Phytoxigene sxtA: | |
Silicate: | |
Total nitrogen: | |
Green algae: | |
Bluegreen algae: | |
Diatoms: | |
Cryptophyta: | |
Total microcystin: | |
Attenuation: | |
Transmission: | |
Photosynthetically active radiation: | |
Sky: |
clear
|
Wave height: | |
Wind speed: | |
Phycocyanin fluoresence: | |
Salinity measured using a sonde [parts per thousand]: | |
Atmospheric temperature: |
22.2 °C
|
Particulate cylindrospermopsin: | |
Redox potential-ORP [millivolts]: | |
Replicate ID: | |
AlgaeTorch Cyanobacterial abundance: | |
AlgaeTorch total: | |
Environment Canada Sampling site: | |
Environment Kenya Sampling site: | |
Amended site name: | |
Station description about location: | |