|
| Sample name: |
SB_ODNR1_062618
|
| Collection timestamp: |
2018-06-26
|
| Location [GAZ ontology]: |
Sandusky Bay
|
| NOAA site: | |
| Reads: | |
| Sample type: |
metagenome
|
| Has paired data: | |
| SRA accession: | SRS17005929 |
| Amplicon target: | |
| Forward primer: | |
| Reverse primer: | |
| Read count: | |
| Reads mapped contigs: | |
| Reads mapped genes: | |
| NCBI BioProject: | PRJNA940836 |
| NCBI BioSample: | SAMN33579336 |
| GOLD analysis projectID: | |
| GOLD sequencing projectID: | |
| JGI study: | |
| JGI biosample: | |
| GAZ id: |
GAZ:00084606
|
| Latitude [decimal degrees]: |
41.4774
|
| Longitude [decimal degrees]: |
-82.73978
|
| ENVO Ontology ID [ENVO ontology]: |
large freshwater lake biome [ENVO:00000891]
|
| Env local scale: |
bay[ENVO:00000032]
|
| Sample material [ENVO ontology]: |
water [ENVO:00002006]
|
| Keywords: | |
| Sample collection depth: |
1 m
|
| Sediment depth: | |
| Depth at sampling location: |
3.05 m
|
| Filter retained pore size: | |
| Pre-filter pore size: | |
| pH: |
9.44
|
| Temperature: |
22.36 °C
|
| Calcium: | |
| Potassium: | |
| Phosphate: | |
| Magnesium: | |
| Ammonium: | |
| Dissolved oxygen: |
12.93 mg/L
|
| Conductivity: |
399 μS/cm
|
| Secchi depth: | |
| Turbidity: | |
| Particulate microcystin: | |
| Dissolved Microcystin: |
24.6 μg/L
|
| Phycocyanin: | |
| Microcystin: | |
| Anatoxin: | |
| Chlorophyll: |
241.51 μg/L
|
| Total phosphorus: |
174.6 μg/L
|
| Total dissolved phosphorus: | |
| Soluble reactive phosphorus: |
3 μg/L
|
| Ammonia: |
4 μg/L
|
| Nitrate and nitrite: | |
| Nitrate: |
0.07 mg/L
|
| Nitrite: |
10 μg/L
|
| Urea: | |
| Particulate organic carbon: | |
| Particulate organic nitrogen: | |
| Dissolved organic carbon: | |
| DOM absorbance at 400 nm: | |
| Hydrogen peroxide: | |
| Suspended particulate matter: | |
| Suspended volitile solids: | |
| Microcystis cell count: | |
| Planktothrix cell count: | |
| Anabaena cell count: | |
| Cylidrospermopsis cell count: | |
| Ice cover: | |
| Chlorophyll a fluorescence: | |
| Sample collection device: |
1m Van Dorn discrete water sample
|
| Modified or experimental: |
False
|
| Is isolate: | |
| Negative control [TRUE / FALSE]: | |
| Mock community [TRUE / FALSE]: | |
| Volume filtered: | |
| Filtration duration [hh:mm:ss]: | |
| qPCR; Phytoxigene total cyanobacteria: | |
| qPCR; Phytoxigene mcyE: | |
| qPCR; Phytoxigene sxtA: | |
| Silicate: | |
| Total nitrogen: |
173.6 μmol/L
|
| Green algae: | |
| Bluegreen algae: | |
| Diatoms: | |
| Cryptophyta: | |
| Total microcystin: | |
| Attenuation: | |
| Transmission: | |
| Photosynthetically active radiation: | |
| Sky: | |
| Wave height: | |
| Wind speed: | |
| Phycocyanin fluoresence : | |
| Salinity measured using a sonde: | |
| Atmospheric temperature: |
22.8 C
|
| Particulate cylindrospermopsin: | |
| Redox potential-ORP: | |
| Replicate ID: | |
| AlgaeTorch Cyanobacterial abundance: | |
| AlgaeTorch total: | |
| Environment Canada Sampling site: | |
| Environment Kenya Sampling site: | |
| Amended site name: | |
| Station description about location: | |