Sample: E2014-0086-100LTR

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Details
Dataset:2014 Western Lake Erie Metagenomes and[…] - Yancey et al. 2022
Sample name: E2014-0086-100LTR
Collection timestamp: 2014-07-21
Location [GAZ ontology]: Lake Erie
NOAA site: WE4
Reads:
Sample type: metatranscriptome
Has paired data: True
SRA accession:SRR7182483
Amplicon target:
Forward primer:
Reverse primer:
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA464361
NCBI BioSample:SAMN09102084
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study:
JGI biosample:
GAZ id: GAZ:00003931
Latitude [decimal degrees]: 41.827
Longitude [decimal degrees]: -83.195
ENVO Ontology ID [ENVO ontology]: Eutrophic Lake [ENVO:01000548]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords: HABs
Sample collection depth: 0-7 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 100 μm
Pre-filter pore size:
pH: 8.86
Temperature: 24.1 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Dissolved oxygen: 6 mg/L
Conductivity: 255.9 μS/cm
Secchi depth:
Turbidity: 1.57 NTU
Particulate microcystin: 1.82 μg/L
Dissolved Microcystin:
Phycocyanin: 6.14 μg/L
Microcystin:
Anatoxin:
Chlorophyll: 5.95 μg/L
Total phosphorus: 14.32 μg/L
Total dissolved phosphorus: 1.74 μg/L
Soluble reactive phosphorus: 0.25 μg/L
Ammonia: 1.69 μg/L
Nitrate and nitrite: 0.318 mg/L
Nitrate:
Nitrite:
Urea:
Particulate organic carbon: 0.89 mg/L
Particulate organic nitrogen: 0.13 mg/L
Dissolved organic carbon: 2.38 mg/L
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter: 3.18 mg/L
Suspended volitile solids: 2.3 mg/L
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sample collection device:
Modified or experimental: False
Is isolate:
Negative control [TRUE / FALSE]:
Mock community [TRUE / FALSE]:
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence:
Salinity measured using a sonde [parts per thousand]:
Atmospheric temperature:
Particulate cylindrospermopsin:
Redox potential-ORP [millivolts]:
Replicate ID:
AlgaeTorch Cyanobacterial abundance:
AlgaeTorch total:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended site name:
Station description about location: