Sample: E2014-0110-100LTR

[ krona chart | abundance/taxa | abundance/functions ]
Details
Dataset:2014 Western Lake Erie Metagenomes and[…] - Yancey et al. 2022
Sample name: E2014-0110-100LTR
Collection timestamp: 2014-09-29
Location [GAZ ontology]: Lake Erie
NOAA site: WE4
Reads:
Sample type: metagenome
Has paired data: True
SRA accession:SRR7182498
Amplicon target:
Fwd primer:
Rev primer:
Read count: 138850034
Reads mapped contigs: 109589646
Reads mapped genes: 32958933
NCBI BioProject:PRJNA464361
Biosample:SAMN09102083
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study ID:
JGI biosample ID:
GAZ id: GAZ:00003931
Latitude [decimal degrees]: 41.8268
Longitude [decimal degrees]: -83.1947
ENVO Ontology ID [ENVO ontology]: Eutrophic Lake [ENVO:01000548]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords: HABs
Sample collection depth: 0-7 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 100 μm
Pre-filter pore size:
pH:
Temperature: 19.9 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Nitrate:
Dissolved oxygen: 8.8 mg/L
Conductivity: 269 μS/cm
Secchi depth: 2.1 m
Turbidity: 4.34 NTU
Particulate microcystin: 0.2 μg/L
Dissolved Microcystin: 0.1 μg/L
Phycocyanin: 3.65 μg/L
Microcystin:
Anatoxin:
Chlorophyll: 9.21 μg/L
Total phosphorus: 17.68 μg/L
Total dissolved phosphorus: 3.91 μg/L
Soluble reactive phosphorus: 0.25 μg/L
Ammonia: 0.33 μg/L
Nitrate and nitrite: 0.188 mg/L
Nitrite:
Urea:
Particulate organic carbon: 0.82 mg/L
Particulate organic nitrogen: 0.14 mg/L
Dissolved organic carbon: 2.72 mg/L
DOM absorbance at 400 nm: 0.36 m-1
Hydrogen peroxide:
Suspended particulate matter: 2.38 mg/L
Suspended volitile solids: 1.57 mg/L
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sampling device:
Modified or experimental: False
Is isolate:
Negative control [TRUE / FALSE]:
Mock community [TRUE / FALSE]:
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin determined by LCMSMS:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence :
Salinity measured using a sonde:
Atmospheric temperature:
Particulate cylindrospermopsin, measured via ELISA:
Redox potential-ORP:
Replicate id if metagenomic samples sequenced in replicate:
AlgaeTorch Cyanobacterial abundance detection (cyanobacteria chlorophyll-a):
AlgaeTorch total chlorophyll-a detection:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended sampling location name if not the same as the original site name:
Station description about location: