Sample name: |
E2014-0124-100LTR
|
Collection timestamp: |
2014-10-20
|
Location [GAZ ontology]: |
Lake Erie
|
NOAA site: |
WE2
|
Reads: | |
Sample type: |
metagenome
|
Has paired data: |
False
|
Amplicon target: | |
Forward primer: | |
Reverse primer: | |
Read count: |
135542844
|
Reads mapped contigs: |
83700886
|
Reads mapped genes: |
38926074
|
NCBI BioProject: | PRJNA464361 |
NCBI BioSample: | SAMN09102085 |
GOLD analysis projectID: | |
GOLD sequencing projectID: | |
JGI study: | |
JGI biosample: | |
GAZ id: |
GAZ:00003931
|
Latitude [decimal degrees]: |
41.7639
|
Longitude [decimal degrees]: |
-83.3308
|
ENVO Ontology ID [ENVO ontology]: |
Eutrophic Lake [ENVO:01000548]
|
Env local scale: |
Lake [ENVO:00000020]
|
Sample material [ENVO ontology]: |
water [ENVO:00002006]
|
Keywords: |
HABs
|
Sample collection depth: |
0-4 m
|
Sediment depth: | |
Depth at sampling location: | |
Filter retained pore size: |
100 μm
|
Pre-filter pore size: | |
pH: |
8.04
|
Temperature: |
12.5 °C
|
Calcium: | |
Potassium: | |
Phosphate: | |
Magnesium: | |
Ammonium: | |
Dissolved oxygen: |
9 mg/L
|
Conductivity: |
297.6 μS/cm
|
Secchi depth: |
1 m
|
Turbidity: |
6.58 NTU
|
Particulate microcystin: |
0.1 μg/L
|
Dissolved Microcystin: |
0.46 μg/L
|
Phycocyanin: |
2.12 μg/L
|
Microcystin: | |
Anatoxin: | |
Chlorophyll: |
7.23 μg/L
|
Total phosphorus: |
44.3 μg/L
|
Total dissolved phosphorus: |
15.96 μg/L
|
Soluble reactive phosphorus: |
9.16 μg/L
|
Ammonia: |
6.57 μg/L
|
Nitrate and nitrite: |
0.162 mg/L
|
Nitrate: | |
Nitrite: | |
Urea: | |
Particulate organic carbon: |
0.77 mg/L
|
Particulate organic nitrogen: |
0.13 mg/L
|
Dissolved organic carbon: |
3.67 mg/L
|
DOM absorbance at 400 nm: | |
Hydrogen peroxide: | |
Suspended particulate matter: |
7.75 mg/L
|
Suspended volitile solids: |
2.33 mg/L
|
Microcystis cell count: | |
Planktothrix cell count: | |
Anabaena cell count: | |
Cylidrospermopsis cell count: | |
Ice cover: | |
Chlorophyll a fluorescence: | |
Sample collection device: | |
Modified or experimental: |
False
|
Is isolate: | |
Negative control [TRUE / FALSE]: | |
Mock community [TRUE / FALSE]: | |
Volume filtered: | |
Filtration duration [hh:mm:ss]: | |
qPCR; Phytoxigene total cyanobacteria: | |
qPCR; Phytoxigene mcyE: | |
qPCR; Phytoxigene sxtA: | |
Silicate: | |
Total nitrogen: | |
Green algae: | |
Bluegreen algae: | |
Diatoms: | |
Cryptophyta: | |
Total microcystin: | |
Attenuation: | |
Transmission: | |
Photosynthetically active radiation: | |
Sky: | |
Wave height: | |
Wind speed: | |
Phycocyanin fluoresence : | |
Salinity measured using a sonde: | |
Atmospheric temperature: | |
Particulate cylindrospermopsin: | |
Redox potential-ORP: | |
Replicate ID: | |
AlgaeTorch Cyanobacterial abundance: | |
AlgaeTorch total: | |
Environment Canada Sampling site: | |
Environment Kenya Sampling site: | |
Amended site name: | |
Station description about location: | |