Sample: E2014-0086-100LTR

Details
Dataset:2014 Western Lake Erie Metagenomes and[…] - Yancey et al. 2022
Sample name: E2014-0086-100LTR
Collection timestamp: 2014-09-08
Location [GAZ ontology]: Lake Erie
NOAA site: WE4
Reads:
Sample type: metatranscriptome
Has paired data: True
SRA accession:SRX4099281
Amplicon target:
Fwd primer:
Rev primer:
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA464361
Biosample:SAMN09102079
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study ID:
JGI biosample ID:
GAZ id: GAZ:00003931
Latitude [decimal degrees]: 41.8264
Longitude [decimal degrees]: -83.1939
ENVO Ontology ID [ENVO ontology]: Eutrophic Lake [ENVO:01000548]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords: HABs
Sample collection depth: 0-7 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 100 μm
Pre-filter pore size:
pH:
Temperature:
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Nitrate:
Dissolved oxygen:
Conductivity:
Secchi depth: 1.4 m
Turbidity: 6.55 NTU
Particulate microcystin: 0.8 μg/L
Dissolved Microcystin: 0.25 μg/L
Phycocyanin: 15.81 μg/L
Microcystin:
Anatoxin:
Chlorophyll: 26.24 μg/L
Total phosphorus: 30.58 μg/L
Total dissolved phosphorus: 3.86 μg/L
Soluble reactive phosphorus: 0.27 μg/L
Ammonia: 1.54 μg/L
Nitrate and nitrite: 0.063 mg/L
Nitrite:
Urea:
Particulate organic carbon: 1.57 mg/L
Particulate organic nitrogen: 0.28 mg/L
Dissolved organic carbon: 3.22 mg/L
DOM absorbance at 400 nm: 0.45 m-1
Hydrogen peroxide:
Suspended particulate matter: 8.52 mg/L
Suspended volitile solids: 4 mg/L
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sampling device:
Modified or experimental: False
Is isolate:
Negative control [TRUE / FALSE]:
Mock community [TRUE / FALSE]:
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin determined by LCMSMS:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence :
Salinity measured using a sonde:
Atmospheric temperature:
Particulate cylindrospermopsin, measured via ELISA:
Redox potential-ORP:
Replicate id if metagenomic samples sequenced in replicate:
AlgaeTorch Cyanobacterial abundance detection (cyanobacteria chlorophyll-a):
AlgaeTorch total chlorophyll-a detection:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended sampling location name if not the same as the original site name:
Station description about location: