|
| Sample name: |
E2014-0086-100LTR
|
| Collection timestamp: |
2014-09-08
|
| Location [GAZ ontology]: |
Lake Erie
|
| NOAA site: |
WE4
|
| Reads: | |
| Sample type: |
metatranscriptome
|
| Has paired data: |
True
|
|
| Amplicon target: | |
| Forward primer: | |
| Reverse primer: | |
| Read count: | |
| Reads mapped contigs: | |
| Reads mapped genes: | |
| NCBI BioProject: | PRJNA464361 |
| NCBI BioSample: | SAMN09102079 |
| GOLD analysis projectID: | |
| GOLD sequencing projectID: | |
| JGI study: | |
| JGI biosample: | |
| GAZ id: |
GAZ:00003931
|
| Latitude [decimal degrees]: |
41.8264
|
| Longitude [decimal degrees]: |
-83.1939
|
| ENVO Ontology ID [ENVO ontology]: |
Eutrophic Lake [ENVO:01000548]
|
| Env local scale: |
Lake [ENVO:00000020]
|
| Sample material [ENVO ontology]: |
water [ENVO:00002006]
|
| Keywords: |
HABs
|
| Sample collection depth: |
0-7 m
|
| Sediment depth: | |
| Depth at sampling location: | |
| Filter retained pore size: |
100 μm
|
| Pre-filter pore size: | |
| pH: |
8.86
|
| Temperature: | |
| Calcium: | |
| Potassium: | |
| Phosphate: | |
| Magnesium: | |
| Ammonium: | |
| Dissolved oxygen: | |
| Conductivity: | |
| Secchi depth: |
1.4 m
|
| Turbidity: |
6.55 NTU
|
| Particulate microcystin: |
0.8 μg/L
|
| Dissolved Microcystin: |
0.25 μg/L
|
| Phycocyanin: |
15.81 μg/L
|
| Microcystin: | |
| Anatoxin: | |
| Chlorophyll: |
26.24 μg/L
|
| Total phosphorus: |
30.58 μg/L
|
| Total dissolved phosphorus: |
3.86 μg/L
|
| Soluble reactive phosphorus: |
0.27 μg/L
|
| Ammonia: |
1.54 μg/L
|
| Nitrate and nitrite: |
0.063 mg/L
|
| Nitrate: | |
| Nitrite: | |
| Urea: | |
| Particulate organic carbon: |
1.57 mg/L
|
| Particulate organic nitrogen: |
0.28 mg/L
|
| Dissolved organic carbon: |
3.22 mg/L
|
| DOM absorbance at 400 nm: |
0.45 m-1
|
| Hydrogen peroxide: | |
| Suspended particulate matter: |
8.52 mg/L
|
| Suspended volitile solids: |
4 mg/L
|
| Microcystis cell count: | |
| Planktothrix cell count: | |
| Anabaena cell count: | |
| Cylidrospermopsis cell count: | |
| Ice cover: | |
| Chlorophyll a fluorescence: | |
| Sample collection device: | |
| Modified or experimental: |
False
|
| Is isolate: | |
| Negative control [TRUE / FALSE]: | |
| Mock community [TRUE / FALSE]: | |
| Volume filtered: | |
| Filtration duration [hh:mm:ss]: | |
| qPCR; Phytoxigene total cyanobacteria: | |
| qPCR; Phytoxigene mcyE: | |
| qPCR; Phytoxigene sxtA: | |
| Silicate: | |
| Total nitrogen: | |
| Green algae: | |
| Bluegreen algae: | |
| Diatoms: | |
| Cryptophyta: | |
| Total microcystin: | |
| Attenuation: | |
| Transmission: | |
| Photosynthetically active radiation: | |
| Sky: | |
| Wave height: | |
| Wind speed: | |
| Phycocyanin fluoresence: | |
| Salinity measured using a sonde [parts per thousand]: | |
| Atmospheric temperature: | |
| Particulate cylindrospermopsin: | |
| Redox potential-ORP [millivolts]: | |
| Replicate ID: | |
| AlgaeTorch Cyanobacterial abundance: | |
| AlgaeTorch total: | |
| Environment Canada Sampling site: | |
| Environment Kenya Sampling site: | |
| Amended site name: | |
| Station description about location: | |