Sample: MC009 (control replicate 1)

Details
Dataset:2013 transcriptomes from Western Lake Erie[…] - Harke et al. 2016
Sample name: MC009 (control replicate 1)
Collection timestamp: 2013-09-12
Location [GAZ ontology]: Lake Erie
NOAA site:
Reads:
Sample type: metatranscriptome
Has paired data: False
SRA accession:SRR1601402
Amplicon target:
Fwd primer:
Rev primer:
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA262053
Biosample:SAMN03079620
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study ID:
JGI biosample ID:
GAZ id: GAZ:00003932
Latitude [decimal degrees]: 41.71
Longitude [decimal degrees]: -83.2971
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords: HABs
Sample collection depth: 0.25 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 0.2 μm
Pre-filter pore size:
pH:
Temperature: 23.1 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium: 0.03048591 mg/L
Nitrate:
Dissolved oxygen: 6.62 mg/L
Conductivity:
Secchi depth: 0.5 m
Turbidity:
Particulate microcystin: 6.95 μg/L
Dissolved Microcystin:
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll: 31.91 μg/L
Total phosphorus: 3.58 μg/L
Total dissolved phosphorus: 0.49 μg/L
Soluble reactive phosphorus: 0.28 μg/L
Ammonia:
Nitrate and nitrite: 0.21 mg/L
Nitrite:
Urea: 0.013 μg/L
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sampling device:
Modified or experimental: True
Is isolate: False
Negative control [TRUE / FALSE]: False
Mock community [TRUE / FALSE]: False
Volume filtered: 1.000 mL
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen: 45.76 umol/L
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin determined by LCMSMS:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence : 20.83 RFU
Salinity measured using a sonde:
Atmospheric temperature:
Particulate cylindrospermopsin, measured via ELISA:
Redox potential-ORP:
Replicate id if metagenomic samples sequenced in replicate:
AlgaeTorch Cyanobacterial abundance detection (cyanobacteria chlorophyll-a):
AlgaeTorch total chlorophyll-a detection:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended sampling location name if not the same as the original site name:
Station description about location: