Sample: HU54

Details
Dataset:Sediment samples from across the[…] - Winters et al. 2014
Sample name: HU54
Collection timestamp: 2008-08-06
Location [GAZ ontology]: Lake Huron
NOAA site:
Reads:
Sample type: amplicon
Has paired data: False
SRA accession:SRS568525
Amplicon target: 16S V3-V5
Fwd primer: 357F
Rev primer: 926R
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA198517
Biosample:SAMN02645165
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study ID:
JGI biosample ID:
GAZ id: GAZ:00000135
Latitude [decimal degrees]: 45.5167
Longitude [decimal degrees]: -83.41717
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale: sediment environment [ENVO:01001048]
Sample material [ENVO ontology]: lake sediment [ENVO:00000546]
Keywords:
Sample collection depth: 91 m
Sediment depth: 0.01 m
Depth at sampling location:
Filter retained pore size:
Pre-filter pore size:
pH: 8.64
Temperature: 3.86 °C
Calcium: 936 mg/L
Potassium: 80 mg/L
Phosphate: 24 mg/L
Magnesium: 144 mg/L
Ammonium: 12 mg/L
Nitrate: 0.5 mg/L
Dissolved oxygen: 12.45 mg/L
Conductivity: 124.74 μS/cm
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll:
Total phosphorus:
Total dissolved phosphorus:
Soluble reactive phosphorus:
Ammonia:
Nitrate and nitrite:
Nitrite:
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sampling device:
Modified or experimental: False
Is isolate:
Negative control [TRUE / FALSE]:
Mock community [TRUE / FALSE]:
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin determined by LCMSMS:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence :
Salinity measured using a sonde:
Atmospheric temperature:
Particulate cylindrospermopsin, measured via ELISA:
Redox potential-ORP:
Replicate id if metagenomic samples sequenced in replicate:
AlgaeTorch Cyanobacterial abundance detection (cyanobacteria chlorophyll-a):
AlgaeTorch total chlorophyll-a detection:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended sampling location name if not the same as the original site name:
Station description about location: