|
| Sample name: |
2018 HBG 008 A
|
| Collection timestamp: |
2018-08-09T11:51:00-04:00
|
| Location [GAZ ontology]: |
Lake Erie
|
| NOAA site: | |
| Reads: | |
| Sample type: |
metagenome
|
| Has paired data: |
False
|
| SRA accession: | SRR23363406 |
| Amplicon target: | |
| Forward primer: | |
| Reverse primer: | |
| Read count: | |
| Reads mapped contigs: | |
| Reads mapped genes: | |
| NCBI BioProject: | PRJNA932433 |
| NCBI BioSample: | SAMN33192213 |
| GOLD analysis projectID: | |
| GOLD sequencing projectID: | |
| JGI study: | |
| JGI biosample: | |
| GAZ id: |
GAZ:00003932
|
| Latitude [decimal degrees]: |
41.6068
|
| Longitude [decimal degrees]: |
-83.05183
|
| ENVO Ontology ID [ENVO ontology]: |
large freshwater lake biome [ENVO:00000891]
|
| Env local scale: |
Lake [ENVO:00000020]
|
| Sample material [ENVO ontology]: |
water [ENVO:00002006]
|
| Keywords: |
HABs
|
| Sample collection depth: |
4.51 m
|
| Sediment depth: | |
| Depth at sampling location: | |
| Filter retained pore size: | |
| Pre-filter pore size: | |
| pH: |
8.72
|
| Temperature: |
25.7 °C
|
| Calcium: | |
| Potassium: | |
| Phosphate: | |
| Magnesium: | |
| Ammonium: |
0.488 mg/L
|
| Dissolved oxygen: |
8.48 mg/L
|
| Conductivity: |
287.5 μS/cm
|
| Secchi depth: |
1.5 m
|
| Turbidity: |
3.9 NTU
|
| Particulate microcystin: |
2.2 μg/L
|
| Dissolved Microcystin: |
0.39 μg/L
|
| Phycocyanin: | |
| Microcystin: |
2.59 μg/L
|
| Anatoxin: | |
| Chlorophyll: |
12.62 μg/L
|
| Total phosphorus: |
0.536 μg/L
|
| Total dissolved phosphorus: | |
| Soluble reactive phosphorus: | |
| Ammonia: | |
| Nitrate and nitrite: |
31.612 mg/L
|
| Nitrate: |
31.612 mg/L
|
| Nitrite: | |
| Urea: | |
| Particulate organic carbon: | |
| Particulate organic nitrogen: | |
| Dissolved organic carbon: | |
| DOM absorbance at 400 nm: | |
| Hydrogen peroxide: | |
| Suspended particulate matter: | |
| Suspended volitile solids: | |
| Microcystis cell count: | |
| Planktothrix cell count: | |
| Anabaena cell count: | |
| Cylidrospermopsis cell count: | |
| Ice cover: | |
| Chlorophyll a fluorescence: |
0.48 rel AU
|
| Sample collection device: | |
| Modified or experimental: |
False
|
| Is isolate: |
False
|
| Negative control [TRUE / FALSE]: |
False
|
| Mock community [TRUE / FALSE]: |
False
|
| Volume filtered: | |
| Filtration duration [hh:mm:ss]: | |
| qPCR; Phytoxigene total cyanobacteria: | |
| qPCR; Phytoxigene mcyE: | |
| qPCR; Phytoxigene sxtA: | |
| Silicate: |
24.384 μmol/L
|
| Total nitrogen: |
66.75 μmol/L
|
| Green algae: |
0 µg/L
|
| Bluegreen algae: |
5.56 µg/L
|
| Diatoms: |
0.53 µg/L
|
| Cryptophyta: |
3.24 µg/L
|
| Total microcystin: |
0.1 μg/L
|
| Attenuation: | |
| Transmission: | |
| Photosynthetically active radiation: | |
| Sky: | |
| Wave height: | |
| Wind speed: | |
| Phycocyanin fluoresence : | |
| Salinity measured using a sonde: | |
| Atmospheric temperature: | |
| Particulate cylindrospermopsin: | |
| Redox potential-ORP: | |
| Replicate ID: | |
| AlgaeTorch Cyanobacterial abundance: | |
| AlgaeTorch total: | |
| Environment Canada Sampling site: | |
| Environment Kenya Sampling site: | |
| Amended site name: | |
| Station description about location: | |