Sample: Superior_Bloom_3

[ krona chart | abundance/taxa | abundance/functions ]
Details
Dataset:Lake Superior dolichospermum bloom - Sheik et al. 2022
Sample name: Superior_Bloom_3
Collection timestamp: 2018-08-11
Location [GAZ ontology]: Lake Superior
NOAA site:
Reads:
Sample type: metagenome
Has paired data: False
SRA accession:SRR12685685
Amplicon target:
Fwd primer:
Rev primer:
Read count: 140547774
Reads mapped contigs: 84460739
Reads mapped genes: 62807472
NCBI BioProject:PRJNA663590
Biosample:SAMN16200840
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study ID:
JGI biosample ID:
GAZ id: GAZ:00003864
Latitude [decimal degrees]: 46.8950
Longitude [decimal degrees]: -91.09353
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords:
Sample collection depth: 1-1.5 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 0.22 μm
Pre-filter pore size:
pH: 8.6
Temperature: 19 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Nitrate:
Dissolved oxygen: 104.7 mg/L
Conductivity: 92.4 μS/cm
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll: 0.9 μg/L
Total phosphorus:
Total dissolved phosphorus:
Soluble reactive phosphorus:
Ammonia:
Nitrate and nitrite:
Nitrite:
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm: 3.5 m-1
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sampling device:
Modified or experimental: False
Is isolate: False
Negative control [TRUE / FALSE]: False
Mock community [TRUE / FALSE]: False
Volume filtered: 5.000 mL
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin determined by LCMSMS:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence :
Salinity measured using a sonde:
Atmospheric temperature:
Particulate cylindrospermopsin, measured via ELISA:
Redox potential-ORP:
Replicate id if metagenomic samples sequenced in replicate:
AlgaeTorch Cyanobacterial abundance detection (cyanobacteria chlorophyll-a):
AlgaeTorch total chlorophyll-a detection:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended sampling location name if not the same as the original site name:
Station description about location: