Sample: Lake_Erie_E2014-0102-100LTR

Details
Dataset:Western Lake Erie metatranscriptomes - Yancey et al. 2022
Sample name: Lake_Erie_E2014-0102-100LTR
Collection timestamp: 2014-10-06
Location [GAZ ontology]: Lake Erie
NOAA site: WE2
Reads:
Sample type: metatranscriptome
Has paired data: False
SRA accession:SRR5256715
Amplicon target:
Fwd primer:
Rev primer:
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA370007
Biosample:SAMN06295601
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study ID:
JGI biosample ID:
GAZ id: GAZ:00003932
Latitude [decimal degrees]: 41.76200
Longitude [decimal degrees]: -83.331
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords:
Sample collection depth:
Sediment depth:
Depth at sampling location:
Filter retained pore size: 100 μm
Pre-filter pore size:
pH: 8.04
Temperature: 15.3 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium: 0.1118 mg/L
Nitrate: 0.15 mg/L
Dissolved oxygen:
Conductivity:
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin: 6.24 μg/L
Microcystin:
Anatoxin:
Chlorophyll: 8.06 μg/L
Total phosphorus: 53 μg/L
Total dissolved phosphorus:
Soluble reactive phosphorus: 12.65 μg/L
Ammonia:
Nitrate and nitrite:
Nitrite:
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sampling device:
Modified or experimental: False
Is isolate:
Negative control [TRUE / FALSE]:
Mock community [TRUE / FALSE]:
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin determined by LCMSMS:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence :
Salinity measured using a sonde:
Atmospheric temperature:
Particulate cylindrospermopsin, measured via ELISA:
Redox potential-ORP:
Replicate id if metagenomic samples sequenced in replicate:
AlgaeTorch Cyanobacterial abundance detection (cyanobacteria chlorophyll-a):
AlgaeTorch total chlorophyll-a detection:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended sampling location name if not the same as the original site name:
Station description about location: