Sample name: | |
Collection timestamp: |
2014-05-27
|
Location [GAZ ontology]: |
Lake Michigan
|
NOAA site: | |
Reads: | |
Sample type: |
metagenome
|
Has paired data: |
False
|
Amplicon target: | |
Forward primer: | |
Reverse primer: | |
Read count: | |
Reads mapped contigs: | |
Reads mapped genes: | |
NCBI BioProject: | PRJNA248239 |
NCBI BioSample: | SAMN03435819 |
GOLD analysis projectID: | Ga0188329 |
GOLD sequencing projectID: | Gp0213938 |
JGI study: |
Gs0129038
|
JGI biosample: |
Gs0213938
|
GAZ id: |
GAZ:00003863
|
Latitude [decimal degrees]: |
41.9668
|
Longitude [decimal degrees]: |
-87.63700
|
ENVO Ontology ID [ENVO ontology]: |
large freshwater lake biome [ENVO:00000891]
|
Env local scale: |
Lake [ENVO:00000020]
|
Sample material [ENVO ontology]: |
water [ENVO:00002006]
|
Keywords: | |
Sample collection depth: |
0.5 m
|
Sediment depth: | |
Depth at sampling location: | |
Filter retained pore size: |
0.1 μm
|
Pre-filter pore size: |
0.45 μm
|
pH: | |
Temperature: | |
Calcium: | |
Potassium: | |
Phosphate: | |
Magnesium: | |
Ammonium: | |
Dissolved oxygen: | |
Conductivity: | |
Secchi depth: | |
Turbidity: | |
Particulate microcystin: | |
Dissolved Microcystin: | |
Phycocyanin: | |
Microcystin: | |
Anatoxin: | |
Chlorophyll: | |
Total phosphorus: | |
Total dissolved phosphorus: | |
Soluble reactive phosphorus: | |
Ammonia: | |
Nitrate and nitrite: | |
Nitrate: | |
Nitrite: | |
Urea: | |
Particulate organic carbon: | |
Particulate organic nitrogen: | |
Dissolved organic carbon: | |
DOM absorbance at 400 nm: | |
Hydrogen peroxide: | |
Suspended particulate matter: | |
Suspended volitile solids: | |
Microcystis cell count: | |
Planktothrix cell count: | |
Anabaena cell count: | |
Cylidrospermopsis cell count: | |
Ice cover: | |
Chlorophyll a fluorescence: | |
Sample collection device: | |
Modified or experimental: |
False
|
Is isolate: |
False
|
Negative control [TRUE / FALSE]: |
False
|
Mock community [TRUE / FALSE]: |
False
|
Volume filtered: |
4000 mL
|
Filtration duration [hh:mm:ss]: | |
qPCR; Phytoxigene total cyanobacteria: | |
qPCR; Phytoxigene mcyE: | |
qPCR; Phytoxigene sxtA: | |
Silicate: | |
Total nitrogen: | |
Green algae: | |
Bluegreen algae: | |
Diatoms: | |
Cryptophyta: | |
Total microcystin: | |
Attenuation: | |
Transmission: | |
Photosynthetically active radiation: | |
Sky: | |
Wave height: | |
Wind speed: | |
Phycocyanin fluoresence : | |
Salinity measured using a sonde: | |
Atmospheric temperature: | |
Particulate cylindrospermopsin: | |
Redox potential-ORP: | |
Replicate ID: | |
AlgaeTorch Cyanobacterial abundance: | |
AlgaeTorch total: | |
Environment Canada Sampling site: | |
Environment Kenya Sampling site: | |
Amended site name: | |
Station description about location: | |