Sample: SAMN03436872

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Details
Dataset:Lake Michigan near Chicago-area beaches - Sible et al. 2015
Sample name:
Collection timestamp: 2014-07-22
Location [GAZ ontology]: Lake Michigan
NOAA site:
Reads:
Sample type: metagenome
Has paired data: False
SRA accession:SRR1974509
Amplicon target:
Forward primer:
Reverse primer:
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA248239
NCBI BioSample:SAMN03436872
GOLD analysis projectID:Ga0188332
GOLD sequencing projectID:Gp0213941
JGI study: Gs0129038
JGI biosample: Gs0213941
GAZ id: GAZ:00003863
Latitude [decimal degrees]: 41.9668
Longitude [decimal degrees]: -87.63700
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords:
Sample collection depth: 0.5 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 0.1 μm
Pre-filter pore size: 0.45 μm
pH:
Temperature:
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Dissolved oxygen:
Conductivity:
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll:
Total phosphorus:
Total dissolved phosphorus:
Soluble reactive phosphorus:
Ammonia:
Nitrate and nitrite:
Nitrate:
Nitrite:
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sample collection device:
Modified or experimental: False
Is isolate: False
Negative control [TRUE / FALSE]: False
Mock community [TRUE / FALSE]: False
Volume filtered: 4000 mL
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence :
Salinity measured using a sonde:
Atmospheric temperature:
Particulate cylindrospermopsin:
Redox potential-ORP:
Replicate ID:
AlgaeTorch Cyanobacterial abundance:
AlgaeTorch total:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended site name:
Station description about location: