Sample: NOAA_Erie_Diel5S_2200h metaT

Details
Dataset:Diel metatranscriptomes from 10-15m[…] - Davenport et al. 2019
Sample name: NOAA_Erie_Diel5S_2200h metaT
Collection timestamp: 2014-08-27
Location [GAZ ontology]: Lake Erie
NOAA site:
Reads:
Sample type: metatranscriptome
Has paired data: True
SRA accession:SRR6048582
Amplicon target:
Fwd primer:
Rev primer:
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA405774
Biosample:SAMN07632872
GOLD analysis projectID:Ga0102691 , Ga0068883
GOLD sequencing projectID:Gp0111917
JGI study ID: Gs0114443
JGI biosample ID: Gb0111623
GAZ id: GAZ:00003932
Latitude [decimal degrees]: 41.6996
Longitude [decimal degrees]: -83.29410
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords:
Sample collection depth:
Sediment depth:
Depth at sampling location:
Filter retained pore size:
Pre-filter pore size:
pH:
Temperature:
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Nitrate:
Dissolved oxygen:
Conductivity:
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll:
Total phosphorus:
Total dissolved phosphorus:
Soluble reactive phosphorus:
Ammonia:
Nitrate and nitrite:
Nitrite:
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sampling device:
Modified or experimental: False
Is isolate: False
Negative control [TRUE / FALSE]: False
Mock community [TRUE / FALSE]: False
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin determined by LCMSMS:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence :
Salinity measured using a sonde:
Atmospheric temperature:
Particulate cylindrospermopsin, measured via ELISA:
Redox potential-ORP:
Replicate id if metagenomic samples sequenced in replicate:
AlgaeTorch Cyanobacterial abundance detection (cyanobacteria chlorophyll-a):
AlgaeTorch total chlorophyll-a detection:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended sampling location name if not the same as the original site name:
Station description about location: