Sample: LakeErieM3_M_9/18/17

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Details
Dataset:Lake Erie and Lake Agawam[…] - Jankowiak and Gobler 2022
Sample name: LakeErieM3_M_9/18/17
Collection timestamp: 2017-09-18
Location [GAZ ontology]: Lake Erie
NOAA site:
Reads:
Sample type: amplicon
Has paired data: False
SRA accession:SRR10885305
Amplicon target: 16S
Forward primer: 515F
Reverse primer: 806R
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA601166
NCBI BioSample:SAMN13852054
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study:
JGI biosample:
GAZ id: GAZ:00003932
Latitude [decimal degrees]: 41.7360
Longitude [decimal degrees]: -83.14718
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords: HABs
Sample collection depth: 0.25 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 0.22 μm
Pre-filter pore size:
pH:
Temperature: 20.5 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Dissolved oxygen:
Conductivity:
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll:
Total phosphorus: 5.88 μg/L
Total dissolved phosphorus:
Soluble reactive phosphorus:
Ammonia: 0.99 μg/L
Nitrate and nitrite:
Nitrate: 0.15 mg/L
Nitrite:
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sample collection device:
Modified or experimental: False
Is isolate: False
Negative control [TRUE / FALSE]: False
Mock community [TRUE / FALSE]: False
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence :
Salinity measured using a sonde:
Atmospheric temperature:
Particulate cylindrospermopsin:
Redox potential-ORP:
Replicate ID:
AlgaeTorch Cyanobacterial abundance:
AlgaeTorch total:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended site name:
Station description about location: