Sample: Mirror_ST12_22_18S-ITS_dualindex_2019

[krona chart | abundance/taxa] [file downloads]
Details
Dataset:Automated sampling of Western Lake Erie[…] - Den Uyl et al. 2022
Sample name: Mirror_ST12_22_18S-ITS_dualindex_2019
Collection timestamp: 2019-08-27T14:02:00-04:00
Location [GAZ ontology]: Lake Erie
NOAA site:
Reads:
Sample type: amplicon
Has paired data: False
SRA accession:SRR14407311
Amplicon target: 18S ITS
Forward primer: 18S ITS Fwd
Reverse primer: 18S ITS Rev
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA702522
NCBI BioSample:SAMN18335530
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study:
JGI biosample:
GAZ id: GAZ:00003932
Latitude [decimal degrees]: 41.7025
Longitude [decimal degrees]: -83.25470
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale:
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords: HABs
Sample collection depth: 3 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 0.22 μm
Pre-filter pore size: 5 μm
pH:
Temperature:
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Dissolved oxygen:
Conductivity:
Secchi depth:
Turbidity:
Particulate microcystin: 1.31 μg/L
Dissolved Microcystin: 0 μg/L
Phycocyanin: 9.57 μg/L
Microcystin:
Anatoxin:
Chlorophyll: 50.99 μg/L
Total phosphorus:
Total dissolved phosphorus: 8.6085 μg/L
Soluble reactive phosphorus: 5.896 μg/L
Ammonia: 8.47 μg/L
Nitrate and nitrite: 0.011 mg/L
Nitrate:
Nitrite:
Urea:
Particulate organic carbon: 3.45 mg/L
Particulate organic nitrogen: 0.49 mg/L
Dissolved organic carbon:
DOM absorbance at 400 nm: 1.2531 m-1
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sample collection device: Niskin
Modified or experimental: False
Is isolate: False
Negative control [TRUE / FALSE]: False
Mock community [TRUE / FALSE]: False
Volume filtered: 40 mL
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence:
Salinity measured using a sonde [parts per thousand]:
Atmospheric temperature:
Particulate cylindrospermopsin:
Redox potential-ORP [millivolts]:
Replicate ID:
AlgaeTorch Cyanobacterial abundance:
AlgaeTorch total:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended site name:
Station description about location: