Sample: ODNR1_06172019

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Details
Dataset:Water samples from Sandusky Bay - McKindles et al. 2023
Sample name: ODNR1_06172019
Collection timestamp: 2019-06-17
Location [GAZ ontology]: Sandusky Bay
NOAA site:
Reads:
Sample type: metatranscriptome
Has paired data:
SRA accession:SRS17056690
Amplicon target:
Forward primer:
Reverse primer:
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA945377
NCBI BioSample:SAMN33780052
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study:
JGI biosample:
GAZ id: GAZ:00084606
Latitude [decimal degrees]: 41.4774
Longitude [decimal degrees]: -82.73978
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale: bay[ENVO:00000032]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords:
Sample collection depth: 1 m
Sediment depth:
Depth at sampling location:
Filter retained pore size:
Pre-filter pore size:
pH: 9.95
Temperature: 19.43 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium: 1.803 mg/L
Dissolved oxygen: 11.36 mg/L
Conductivity: 420 μS/cm
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin: 0.51 μg/L
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll: 166.77 μg/L
Total phosphorus: 4.674 μg/L
Total dissolved phosphorus:
Soluble reactive phosphorus: 309 μg/L
Ammonia:
Nitrate and nitrite: 42.992 mg/L
Nitrate: 41.716 mg/L
Nitrite: 1276 μg/L
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sample collection device:
Modified or experimental: False
Is isolate:
Negative control [TRUE / FALSE]:
Mock community [TRUE / FALSE]:
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky: cloudy
Wave height:
Wind speed:
Phycocyanin fluoresence :
Salinity measured using a sonde:
Atmospheric temperature: 18.9 C
Particulate cylindrospermopsin:
Redox potential-ORP:
Replicate ID:
AlgaeTorch Cyanobacterial abundance:
AlgaeTorch total:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended site name:
Station description about location: