Sample name: |
Bridge_June_26_2018
|
Collection timestamp: |
2018-06-26
|
Location [GAZ ontology]: |
Sandusky Bay
|
NOAA site: | |
Reads: | |
Sample type: |
metatranscriptome
|
Has paired data: | |
SRA accession: | SRS16968431 |
Amplicon target: | |
Forward primer: | |
Reverse primer: | |
Read count: | |
Reads mapped contigs: | |
Reads mapped genes: | |
NCBI BioProject: | PRJNA941812 |
NCBI BioSample: | SAMN33610339 |
GOLD analysis projectID: | |
GOLD sequencing projectID: | |
JGI study: | |
JGI biosample: | |
GAZ id: |
GAZ:00084606
|
Latitude [decimal degrees]: |
41.4802
|
Longitude [decimal degrees]: |
-82.83433
|
ENVO Ontology ID [ENVO ontology]: |
large freshwater lake biome [ENVO:00000891]
|
Env local scale: |
bay[ENVO:00000032]
|
Sample material [ENVO ontology]: |
water [ENVO:00002006]
|
Keywords: | |
Sample collection depth: |
0.5 m
|
Sediment depth: | |
Depth at sampling location: |
3.66 m
|
Filter retained pore size: | |
Pre-filter pore size: | |
pH: |
9.36
|
Temperature: |
22.5 °C
|
Calcium: | |
Potassium: | |
Phosphate: | |
Magnesium: | |
Ammonium: | |
Dissolved oxygen: |
11.45 mg/L
|
Conductivity: |
409 μS/cm
|
Secchi depth: | |
Turbidity: | |
Particulate microcystin: | |
Dissolved Microcystin: |
15.8 μg/L
|
Phycocyanin: | |
Microcystin: | |
Anatoxin: | |
Chlorophyll: |
200.97 μg/L
|
Total phosphorus: |
167.6 μg/L
|
Total dissolved phosphorus: | |
Soluble reactive phosphorus: |
3 μg/L
|
Ammonia: |
7 μg/L
|
Nitrate and nitrite: | |
Nitrate: |
2.76 mg/L
|
Nitrite: |
140 μg/L
|
Urea: | |
Particulate organic carbon: | |
Particulate organic nitrogen: | |
Dissolved organic carbon: | |
DOM absorbance at 400 nm: | |
Hydrogen peroxide: | |
Suspended particulate matter: |
43.2 mg/L
|
Suspended volitile solids: | |
Microcystis cell count: | |
Planktothrix cell count: | |
Anabaena cell count: | |
Cylidrospermopsis cell count: | |
Ice cover: | |
Chlorophyll a fluorescence: | |
Sample collection device: | |
Modified or experimental: |
False
|
Is isolate: | |
Negative control [TRUE / FALSE]: | |
Mock community [TRUE / FALSE]: | |
Volume filtered: | |
Filtration duration [hh:mm:ss]: | |
qPCR; Phytoxigene total cyanobacteria: | |
qPCR; Phytoxigene mcyE: | |
qPCR; Phytoxigene sxtA: | |
Silicate: | |
Total nitrogen: |
191.3 μmol/L
|
Green algae: | |
Bluegreen algae: | |
Diatoms: | |
Cryptophyta: | |
Total microcystin: | |
Attenuation: | |
Transmission: | |
Photosynthetically active radiation: | |
Sky: | |
Wave height: | |
Wind speed: | |
Phycocyanin fluoresence : | |
Salinity measured using a sonde: | |
Atmospheric temperature: |
22.8 C
|
Particulate cylindrospermopsin: | |
Redox potential-ORP: | |
Replicate ID: | |
AlgaeTorch Cyanobacterial abundance: | |
AlgaeTorch total: | |
Environment Canada Sampling site: | |
Environment Kenya Sampling site: | |
Amended site name: | |
Station description about location: | |