Sample: 35-20190818-0.5M-B

[krona chart | abundance/taxa] [file downloads]
Details
Dataset:Sampling from the Thames River,[…] - Crevecoeur et al. 2023
Sample name: 35-20190818-0.5M-B
Collection timestamp: 2019-08-18
Location [GAZ ontology]: Thames River
NOAA site:
Reads:
Sample type: amplicon
Has paired data:
SRA accession:SRS15072640
Amplicon target:
Forward primer: 515F
Reverse primer: 926R
Read count:
Reads mapped contigs:
Reads mapped genes:
NCBI BioProject:PRJNA877648
NCBI BioSample:SAMN30717030
GOLD analysis projectID:
GOLD sequencing projectID:
JGI study:
JGI biosample:
GAZ id: GAZ:00148651
Latitude [decimal degrees]: 42.3929
Longitude [decimal degrees]: -82.21069
ENVO Ontology ID [ENVO ontology]: freshwater river biome [ENVO:01000253]
Env local scale: freshwater river [ENVO:01000297]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords:
Sample collection depth:
Sediment depth:
Depth at sampling location:
Filter retained pore size: 0.2 μm
Pre-filter pore size:
pH:
Temperature:
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Dissolved oxygen:
Conductivity:
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll:
Total phosphorus:
Total dissolved phosphorus:
Soluble reactive phosphorus:
Ammonia:
Nitrate and nitrite:
Nitrate:
Nitrite:
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sample collection device:
Modified or experimental: False
Is isolate:
Negative control [TRUE / FALSE]:
Mock community [TRUE / FALSE]:
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence:
Salinity measured using a sonde [parts per thousand]:
Atmospheric temperature:
Particulate cylindrospermopsin:
Redox potential-ORP [millivolts]:
Replicate ID:
AlgaeTorch Cyanobacterial abundance:
AlgaeTorch total:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended site name:
Station description about location: