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Found 5098 samples with:

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Download: [samples (this table)] [taxon abundances] [functional_abundance]
Sample Name/ID Sample type Amplicon target Location / site Latitude Longitude Collection timestamp Dataset
LE WWC BNZ 37 metatranscriptome — Lake Erie 42.4295 -81.20440 2020-05-22 Western and Central Lake Erie[…] - Zepernick et al. 2022
WE13 pre-bloom multiplex run 2 metagenome — Lake Erie / WE13 42.0700 -81.34000 2019-05-31 Long-read sequencing of 2019 Western[…] - Koeppel et al. 2022
rr856p4 amplicon — Lake Mendota 43.0995 -89.4045 2010-02-13 Lake Mendota (WI) amplicon metagenomes - Rohwer et al. 2023
BIM8M amplicon — — — Maumee River and mock community[…] - Klymus et al. 2017
BIM4M amplicon — Maumee River 41.4481 -83.78580 2012-08-27 Maumee River and mock community[…] - Klymus et al. 2017
WE13 pre-bloom multiplex run 1 metagenome — Lake Erie / WE13 42.0700 -81.34000 2019-05-31 Long-read sequencing of 2019 Western[…] - Koeppel et al. 2022
48-Bicarbonate-RepB metatranscriptome — Lake Erie 41.7491 -83.1074 2019-07-21 Metatranscriptomes from 2019 Lake Erie[…] - Pound et al. 2022
rr155p1 amplicon — Lake Mendota 43.0995 -89.4045 2002-08-01 Lake Mendota (WI) amplicon metagenomes - Rohwer et al. 2023
LE WWC BNZ 29 metatranscriptome — Lake Erie 42.4295 -81.20440 2020-05-22 Western and Central Lake Erie[…] - Zepernick et al. 2022
LE-Aug1a metatranscriptome — Lake Erie 41.79 -83.15 August 2014 Metatranscriptomes from 2014 Lake Erie[…] - Steffen et al. 2017
LE-W8 metatranscriptome — Lake Erie / WE8 41.79 -83.15 August 2014 Metatranscriptomes from 2014 Lake Erie[…] - Steffen et al. 2017
SPSC3PRO1 amplicon — — — Maumee River and mock community[…] - Klymus et al. 2017
LE-W6 metatranscriptome — Lake Erie / WE6 41.79 -83.15 August 2014 Metatranscriptomes from 2014 Lake Erie[…] - Steffen et al. 2017
LE-W2a metatranscriptome — Lake Erie / WE2 41.79 -83.15 August 2014 Metatranscriptomes from 2014 Lake Erie[…] - Steffen et al. 2017
LE-W4a metatranscriptome — Lake Erie / WE4 41.79 -83.15 August 2014 Metatranscriptomes from 2014 Lake Erie[…] - Steffen et al. 2017
LE-Aug2b metatranscriptome — Lake Erie 41.79 -83.15 August 2014 Metatranscriptomes from 2014 Lake Erie[…] - Steffen et al. 2017
E2014-0046-100LTR metagenome — Lake Erie / WE2 41.7653 -83.3306 2014-08-04 2014 Western Lake Erie Metagenomes and[…] - Yancey et al. 2022
LE WWC BNZ 31 metatranscriptome — Lake Erie 42.4295 -81.20440 2020-05-22 Western and Central Lake Erie[…] - Zepernick et al. 2022
LE-W13b metatranscriptome — Lake Erie / WE13 41.79 -83.15 August 2014 Metatranscriptomes from 2014 Lake Erie[…] - Steffen et al. 2017
negative control metagenome — — — 2022-02-16 Long-read sequencing of 2019 Western[…] - Koeppel et al. 2022
WE02 pre-bloom full run 1 metagenome — Lake Erie / WE13 42.0700 -81.34000 2019-05-31 Long-read sequencing of 2019 Western[…] - Koeppel et al. 2022
E2014-0034-100LTR metatranscriptome — Lake Erie / WE2 41.7644 -83.3322 2014-07-21 2014 Western Lake Erie Metagenomes and[…] - Yancey et al. 2022
LE-W13a metatranscriptome — Lake Erie / WE13 41.79 -83.15 August 2014 Metatranscriptomes from 2014 Lake Erie[…] - Steffen et al. 2017
LE-Aug1b metatranscriptome — Lake Erie 41.79 -83.15 August 2014 Metatranscriptomes from 2014 Lake Erie[…] - Steffen et al. 2017
E2014-0106-CNA metagenome — Lake Erie / WE2 41.7647 -83.3350 2014-09-29 2014 Western Lake Erie Metagenomes and[…] - Yancey et al. 2022